Hello,
I have a question concerning the re-use of the decomposition object.
My dataset contains 22.500 phenotypes and 60.000 SNPs for 200 samples. First I compute the spectral decomposition object and store this using -eigenOut xx for the first phenotype. For the remaining phenotypes, which were adressed using -mpheno, the already computed decomposition object should be used.
When I use -runGWAS NORUN and -eigen xx, nothing happens and I don't get any output data.
Is the -eigen option not included yet?
Thanks in advance!
Franziska
I have a question concerning the re-use of the decomposition object.
My dataset contains 22.500 phenotypes and 60.000 SNPs for 200 samples. First I compute the spectral decomposition object and store this using -eigenOut xx for the first phenotype. For the remaining phenotypes, which were adressed using -mpheno, the already computed decomposition object should be used.
When I use -runGWAS NORUN and -eigen xx, nothing happens and I don't get any output data.
Is the -eigen option not included yet?
Thanks in advance!
Franziska