New Post: Problems compiling fastlmm 2.05
Hi, I've downloaded Fastlmm 2.05 and tried to compile it on a RHEL 5.0 distribution. I've already installed the latest MKL 11.0 version. This is the error I get: Compiling sources with MKL Library In...
View ArticleNew Post: Problems compiling fastlmm 2.05
I should mention, I tried running the binaries of version 2.05 in the first place, but got this error: FATAL: kernel too old Segmentation fault I get this error for version 2.04 as well, but not for...
View ArticleNew Post: Problems compiling fastlmm 2.05
I am compiling under ubuntu and have not tried redhat.I can take a look tomorrow but from the error,In file included from ./Inc/FastLmmC.h:144, from Src/Beta.cpp:2:./Inc/Utils.h: In function ‘int...
View ArticleNew Post: Problems compiling fastlmm 2.05
btsai, The ouput from uname -a on my Ubuntu system info is: Linux erg06lx 3.5.0-32-generic #53~precise1-Ubuntu SMP Wed May 29 20:33:37 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux I don't know enough about...
View ArticleNew Post: Problems compiling fastlmm 2.05
Hi Bob, thanks, I managed to compile and run it now. How do I determine how much memory is needed to load and process my data? I'm trying to use the autoSelect feature for cross validation, and the...
View ArticleNew Post: Problems compiling fastlmm 2.05
just as a followup, this is the error i get: fastlmmc -autoSelect ASout -randomSeed 1 -autoSelectFolds 10 -bfilesim all_3 -pheno all_3.phenotype -mpheno 1 FastLmmC v2.03.20130101 - Factored Spectrally...
View ArticleNew Post: Problems compiling fastlmm 2.05
btsai,Sorry I was out for vacation last week and just saw this now.I am glad to see you were able to compile. We had another report of problems with RHEL and found that RedHat RHEL is still using a 2.6...
View ArticleNew Post: -eigenOut and -excludeByPosition
Is it possible to pre-compute (and save via -eigenOut and/or -simOut) a genetic similarity matrix, then load it in another session and use -excludeByPosition? I can't seem to get it to work, fastlmm...
View ArticleNew Post: -eigenOut and -excludeByPosition
Sorry, but it is not possible to use -excludeByPosition and -sim or -Eigen at this time. We have added this to the requested feature list. I do not yet have an expected release time -bobd-
View ArticleNew Post: -eigenOut and -excludeByPosition
thanks --- I need the feature badly though, do you have any quick pointers as to how I should implement myself (and/or whether this is "straightforward")? Thanks!
View ArticleNew Post: Problems compiling fastlmm 2.05
Hi Bob, Thanks, I really would appreciate the new version, as I trust your fidgeting of the code more than mine. :-) It turns out for the dataset size I was talking about above, it requires 52GB to...
View ArticleUpdated Wiki: Home
You may find more current and ongoing research results at theirFaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies...
View ArticleUpdated Wiki: Home
You may find more current and ongoing research results at theFaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies...
View ArticleUpdated Wiki: Home
You may find more current and ongoing research results at theFaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies...
View ArticleUpdated Wiki: Home
You may find more current research and software at theFaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies (GWAS) on...
View ArticleUpdated Wiki: Home
You may find more current research and software at theFaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies (GWAS) on...
View ArticleUpdated Wiki: Home
More current research and software can be found at the eScience FaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies...
View ArticleUpdated Release: FastLmm v1.09 Binaries for Windows and Linux (Apr 09, 2012)
More current research and software can be found at the eScience FaST-LMM site.These files contain the files necessary to run FaSTLMM on Windows or Linux along with the license and users manual. To...
View ArticleUpdated Wiki: Home
More current research and software can be found at the eScience FaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies...
View ArticleUpdated Wiki: Home
More current research and software can be found at the eScience FaST-LMM site.FaST-LMM (Factored SpectrallyTransformed Linear MixedModels) is a program for performing genome-wide association studies...
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